Studies were carried out to determine the prevalence of malaria parasite infection among infants and children (0-12yrs) in Ota, Southwestern Nigeria between April and December 2008. The two hospitals used were Ota General Hospital and Covenant University Health Centre, Canaanland, Ota. Thick and thin films were made and stained using standard parasitological procedures. Structured Questionnaires were distributed to ascertain the age, sex, drugs or insecticides used and state of health of the subjects before recruiting them into the study. Overall, 215 (80.5%) of the 267 children investigated were found to have malaria infection. Age group (0-5 years) had the highest frequency rate of 84.7% with mean parasite density of 900 and the difference between the age groups was statistically significant (p